SNP Profiles of IMC 54 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
1._RUQ_11	_	_	CG	_	_	_	TT	_	CC	_	GG	_	AA	_
2._IMC_54	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
3._IMC_54	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
4._IMC_54	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
5._IMC_54	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
6._IMC_54	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
7._GC-04-018-1-18	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
8._GC-04-018-1-18	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
9._GC-04-018-1-18	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
10._GC-04-018-1-18	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
11._GC-04-018-1-18	CC	AG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CT	AA	TT
12._RUQ_11	_	AG	CG	_	_	_	TT	_	_	_	_	CT	AA	_
13._IMC_54	_	GG	CG	_	CC	TT	GT	CT	_	AT	GG	CT	AA	TT
14._GC-04-18-1-18	GG	AG	CG	AA	CC	AA	AA	_	_	AA	GG	AG	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
1._RUQ_11	_	_	_	_	CC	GG	AA	_	AA	GG	_	_	CC	_
2._IMC_54	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
3._IMC_54	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
4._IMC_54	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
5._IMC_54	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
6._IMC_54	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
7._GC-04-018-1-18	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
8._GC-04-018-1-18	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
9._GC-04-018-1-18	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
10._GC-04-018-1-18	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
11._GC-04-018-1-18	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC	AA
12._RUQ_11	_	_	_	TT	CC	GG	_	CC	AA	GG	GT	CT	CC	AA
13._IMC_54	TT	GG	CT	CT	CC	GT	AA	CC	AC	GG	GG	CC	CC	AA
14._GC-04-18-1-18	AT	GG	GG	AG	GG	CC	_	GG	AA	GG	AC	_	CC	_

	29	30	31	32	33	34	35	36	37	38
_Input profile	AG	AA	CT	AG	CC	AC	CT	GT	TT	GG	X_X	X_X	X_X	X_X
1._RUQ_11	_	_	_	AG	_	_	_	_	_	_	X_X	X_X	X_X	X_X
2._IMC_54	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
3._IMC_54	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
4._IMC_54	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
5._IMC_54	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
6._IMC_54	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
7._GC-04-018-1-18	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
8._GC-04-018-1-18	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
9._GC-04-018-1-18	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
10._GC-04-018-1-18	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
11._GC-04-018-1-18	GG	AA	TT	AG	CC	AA	CT	GT	TT	GG	X_X	X_X	X_X	X_X
12._RUQ_11	_	AA	TT	AG	CC	AC	CT	GT	_	_	X_X	X_X	X_X	X_X
13._IMC_54	AG	AT	CT	GG	_	AC	_	GT	AT	CG	X_X	X_X	X_X	X_X
14._GC-04-18-1-18	GG	AA	AA	AG	GG	AC	AG	AC	TT	GG	X_X	X_X	X_X	X_X

Input profile: IMC_54 RUQ_11

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._IMC_54 RUQ_11

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._IMC_54

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 6 > FP

Dapeng Zhang, 2016

3._IMC_54

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 5 > FP

Dapeng Zhang, 2016

4._IMC_54

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 4 > FP

Dapeng Zhang, 2016

5._IMC_54

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 3 > FP

Dapeng Zhang, 2016

6._IMC_54

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_54 GC-04-018-1-18

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

8._IMC_54 GC-04-018-1-18

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

9._IMC_54 GC-04-018-1-18

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

10._IMC_54 GC-04-018-1-18

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

11._IMC_54 GC-04-018-1-18

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

12._IMC_54 RUQ_11

95.5 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._IMC_54

78.8 %
33 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D311

Dapeng Zhang, 2016

14._IMC_54 GC-04-18-1-18

50 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 1, Rep: 18, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1414	5	TcSNP1350
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP32	38	TcSNP25